KEGG   PATHWAY: elb00020
Entry
elb00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Elizabethkingia miricola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elb00020  Citrate cycle (TCA cycle)
elb00020

Module
elb_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:elb00020]
elb_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elb00020]
elb_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elb00020]
elb_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elb00020]
elb_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elb00020]
Other DBs
GO: 0006099
Organism
Elizabethkingia miricola [GN:elb]
Gene
VO54_03012  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
VO54_00899  acoA_2; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
VO54_02849  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
VO54_00052  icd; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
VO54_00769  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
VO54_00768  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
VO54_00252  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
VO54_00177  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
VO54_01751  lpd_2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
VO54_00321  lpd_1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
VO54_03798  sucD; Succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
VO54_01992  sucC; Succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
VO54_01775  frdA_1; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VO54_02276  frdA_2; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
VO54_01774  frdB_1; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
VO54_02275  frdB_2; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
VO54_01776  hypothetical protein [KO:K00241]
VO54_02277  hypothetical protein [KO:K00241]
VO54_02784  fumA; Fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
VO54_02781  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
VO54_01892  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
VO54_01344  mqo; Malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
VO54_02926  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
VO54_00722  acoA_1; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
VO54_02128  bfmBAB_1; 2-oxoisovalerate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
VO54_00721  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elb00010  Glycolysis / Gluconeogenesis
elb00053  Ascorbate and aldarate metabolism
elb00061  Fatty acid biosynthesis
elb00062  Fatty acid elongation
elb00071  Fatty acid degradation
elb00190  Oxidative phosphorylation
elb00220  Arginine biosynthesis
elb00250  Alanine, aspartate and glutamate metabolism
elb00280  Valine, leucine and isoleucine degradation
elb00350  Tyrosine metabolism
elb00470  D-Amino acid metabolism
elb00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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