KEGG   PATHWAY: eliz00020
Entry
eliz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Elizabethkingia sp. M8
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eliz00020  Citrate cycle (TCA cycle)
eliz00020

Module
eliz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eliz00020]
eliz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:eliz00020]
eliz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eliz00020]
eliz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:eliz00020]
eliz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eliz00020]
Other DBs
GO: 0006099
Organism
Elizabethkingia sp. M8 [GN:eliz]
Gene
JCR23_12550  citrate synthase [KO:K01647] [EC:2.3.3.1]
JCR23_11630  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
JCR23_17135  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
JCR23_02415  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
JCR23_17845  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
JCR23_17850  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
JCR23_01370  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
JCR23_16250  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JCR23_01090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JCR23_01805  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
JCR23_05690  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
JCR23_15015  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
JCR23_08500  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JCR23_16150  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
JCR23_08490  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JCR23_16160  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
JCR23_08505  succinate dehydrogenase cytochrome b subunit [KO:K00241]
JCR23_16145  succinate dehydrogenase cytochrome b subunit [KO:K00241]
JCR23_11320  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
JCR23_11305  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
JCR23_15615  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
JCR23_03590  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
JCR23_12060  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
JCR23_18070  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
JCR23_07850  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
JCR23_18075  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eliz00010  Glycolysis / Gluconeogenesis
eliz00053  Ascorbate and aldarate metabolism
eliz00061  Fatty acid biosynthesis
eliz00062  Fatty acid elongation
eliz00071  Fatty acid degradation
eliz00190  Oxidative phosphorylation
eliz00220  Arginine biosynthesis
eliz00250  Alanine, aspartate and glutamate metabolism
eliz00280  Valine, leucine and isoleucine degradation
eliz00350  Tyrosine metabolism
eliz00470  D-Amino acid metabolism
eliz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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