KEGG   PATHWAY: elt00020
Entry
elt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Elizabethkingia sp. JS20170427COW
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elt00020  Citrate cycle (TCA cycle)
elt00020

Module
elt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:elt00020]
elt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elt00020]
elt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elt00020]
elt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elt00020]
elt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elt00020]
Other DBs
GO: 0006099
Organism
Elizabethkingia sp. JS20170427COW [GN:elt]
Gene
FGE20_03550  citrate synthase [KO:K01647] [EC:2.3.3.1]
FGE20_03370  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FGE20_05665  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FGE20_02110  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FGE20_08710  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FGE20_00480  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FGE20_08715  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FGE20_11075  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FGE20_11300  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FGE20_00260  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FGE20_11405  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FGE20_06280  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FGE20_06285  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FGE20_06275  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FGE20_04565  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FGE20_04570  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FGE20_07895  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FGE20_09850  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FGE20_03975  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FGE20_11505  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FGE20_07475  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FGE20_11500  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elt00010  Glycolysis / Gluconeogenesis
elt00053  Ascorbate and aldarate metabolism
elt00061  Fatty acid biosynthesis
elt00062  Fatty acid elongation
elt00071  Fatty acid degradation
elt00190  Oxidative phosphorylation
elt00220  Arginine biosynthesis
elt00250  Alanine, aspartate and glutamate metabolism
elt00280  Valine, leucine and isoleucine degradation
elt00350  Tyrosine metabolism
elt00470  D-Amino acid metabolism
elt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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