KEGG   PATHWAY: elut00020
Entry
elut00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Ereboglobus luteus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
elut00020  Citrate cycle (TCA cycle)
elut00020

Module
elut_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:elut00020]
elut_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:elut00020]
elut_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:elut00020]
elut_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:elut00020]
Other DBs
GO: 0006099
Organism
Ereboglobus luteus [GN:elut]
Gene
CKA38_01510  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CKA38_10280  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
CKA38_00665  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CKA38_01145  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CKA38_01140  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CKA38_00155  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CKA38_07545  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CKA38_13565  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CKA38_13550  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CKA38_07950  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CKA38_07945  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
CKA38_07955  succinate dehydrogenase [KO:K00241]
CKA38_06165  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CKA38_13225  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
CKA38_02015  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CKA38_07530  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
CKA38_00605  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CKA38_00600  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
CKA38_09345  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
elut00010  Glycolysis / Gluconeogenesis
elut00053  Ascorbate and aldarate metabolism
elut00061  Fatty acid biosynthesis
elut00071  Fatty acid degradation
elut00190  Oxidative phosphorylation
elut00220  Arginine biosynthesis
elut00250  Alanine, aspartate and glutamate metabolism
elut00280  Valine, leucine and isoleucine degradation
elut00350  Tyrosine metabolism
elut00470  D-Amino acid metabolism
elut00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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