KEGG   PATHWAY: emai00020
Entry
emai00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Echinicola marina
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
emai00020  Citrate cycle (TCA cycle)
emai00020

Module
emai_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:emai00020]
emai_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:emai00020]
emai_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:emai00020]
emai_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:emai00020]
emai_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:emai00020]
Other DBs
GO: 0006099
Organism
Echinicola marina [GN:emai]
Gene
KZP23_19805  citrate synthase [KO:K01647] [EC:2.3.3.1]
KZP23_12690  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KZP23_21350  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
KZP23_09320  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KZP23_21470  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KZP23_04075  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KZP23_04070  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KZP23_12275  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
KZP23_04060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZP23_22605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KZP23_00075  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KZP23_19220  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KZP23_21040  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KZP23_21035  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KZP23_21045  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KZP23_06950  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KZP23_10330  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KZP23_20315  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KZP23_05255  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KZP23_20385  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KZP23_20815  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
emai00010  Glycolysis / Gluconeogenesis
emai00053  Ascorbate and aldarate metabolism
emai00061  Fatty acid biosynthesis
emai00071  Fatty acid degradation
emai00190  Oxidative phosphorylation
emai00220  Arginine biosynthesis
emai00250  Alanine, aspartate and glutamate metabolism
emai00280  Valine, leucine and isoleucine degradation
emai00350  Tyrosine metabolism
emai00470  D-Amino acid metabolism
emai00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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