KEGG   PATHWAY: emn00020
Entry
emn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Elizabethkingia anophelis FMS-007
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
emn00020  Citrate cycle (TCA cycle)
emn00020

Module
emn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:emn00020]
emn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:emn00020]
emn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:emn00020]
emn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:emn00020]
emn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:emn00020]
Other DBs
GO: 0006099
Organism
Elizabethkingia anophelis FMS-007 [GN:emn]
Gene
M876_15260  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
M876_16095  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
M876_06260  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
M876_10345  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M876_06860  2-oxoglutarate dehydrogenase E1 [KO:K00164] [EC:1.2.4.2]
M876_06865  2-oxoglutarate dehydrogenase E2 [KO:K00658] [EC:2.3.1.61]
M876_09320  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
M876_09745  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M876_02805  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
M876_09045  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M876_11215  succinyl-CoA synthetase subsunit alpha [KO:K01902] [EC:6.2.1.5]
M876_01710  sucC; malate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M876_00555  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
M876_02710  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
M876_00560  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
M876_02715  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
M876_00550  succinate dehydrogenase [KO:K00241]
M876_02705  succinate dehydrogenase [KO:K00241]
M876_16395  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M876_16410  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M876_02175  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M876_04155  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
M876_15695  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
M876_07090  pyruvate dehydrogenase E1 subunit alpha [KO:K00161] [EC:1.2.4.1]
M876_01180  pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
M876_07095  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
emn00010  Glycolysis / Gluconeogenesis
emn00053  Ascorbate and aldarate metabolism
emn00061  Fatty acid biosynthesis
emn00062  Fatty acid elongation
emn00071  Fatty acid degradation
emn00190  Oxidative phosphorylation
emn00220  Arginine biosynthesis
emn00250  Alanine, aspartate and glutamate metabolism
emn00280  Valine, leucine and isoleucine degradation
emn00350  Tyrosine metabolism
emn00470  D-Amino acid metabolism
emn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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