KEGG   PATHWAY: emt00020
Entry
emt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Eubacterium maltosivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
emt00020  Citrate cycle (TCA cycle)
emt00020

Module
emt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:emt00020]
Other DBs
GO: 0006099
Organism
Eubacterium maltosivorans [GN:emt]
Gene
CPZ25_009790  2-isopropylmalate synthase [KO:K05942] [EC:2.3.3.3]
CPZ25_003670  citrate/2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
CPZ25_000985  isocitrate/isopropylmalate dehydrogenase family protein [KO:K00030] [EC:1.1.1.41]
CPZ25_008585  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPZ25_011920  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CPZ25_016880  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CPZ25_019420  3-methyl-2-oxobutanoate dehydrogenase subunit VorB [KO:K00174] [EC:1.2.7.3 1.2.7.11]
CPZ25_016875  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CPZ25_019425  2-oxoglutarate oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
CPZ25_019430  2-oxoacid:ferredoxin oxidoreductase subunit gamma [KO:K00177] [EC:1.2.7.3]
CPZ25_019415  4Fe-4S dicluster domain-containing protein [KO:K00176] [EC:1.2.7.3]
CPZ25_001690  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
CPZ25_001695  Fe-S-containing hydro-lyase [KO:K01678] [EC:4.2.1.2]
CPZ25_016565  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CPZ25_008590  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CPZ25_012300  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
CPZ25_013685  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
CPZ25_012295  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
CPZ25_013690  pyruvate ferredoxin oxidoreductase [KO:K00170] [EC:1.2.7.1]
CPZ25_013675  pyruvate synthase [KO:K00172] [EC:1.2.7.1]
CPZ25_013680  4Fe-4S dicluster domain-containing protein [KO:K00171] [EC:1.2.7.1]
CPZ25_000995  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
emt00010  Glycolysis / Gluconeogenesis
emt00053  Ascorbate and aldarate metabolism
emt00061  Fatty acid biosynthesis
emt00071  Fatty acid degradation
emt00190  Oxidative phosphorylation
emt00220  Arginine biosynthesis
emt00250  Alanine, aspartate and glutamate metabolism
emt00280  Valine, leucine and isoleucine degradation
emt00350  Tyrosine metabolism
emt00470  D-Amino acid metabolism
emt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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