KEGG   PATHWAY: eng00020
Entry
eng00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Endozoicomonas sp. GU-1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
eng00020  Citrate cycle (TCA cycle)
eng00020

Module
eng_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:eng00020]
eng_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:eng00020]
eng_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:eng00020]
Other DBs
GO: 0006099
Organism
Endozoicomonas sp. GU-1 [GN:eng]
Gene
O2T12_16870  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
O2T12_14680  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
O2T12_13850  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
O2T12_16840  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
O2T12_16835  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
O2T12_16825  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
O2T12_16830  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
O2T12_16855  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
O2T12_16850  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
O2T12_16865  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
O2T12_16860  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
O2T12_07780  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
O2T12_07785  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
O2T12_07790  hypothetical protein [KO:K00246]
O2T12_07795  fumarate reductase subunit D [KO:K00247]
O2T12_16145  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
O2T12_05345  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
O2T12_23300  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
O2T12_23065  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
O2T12_23060  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
O2T12_02495  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
eng00010  Glycolysis / Gluconeogenesis
eng00053  Ascorbate and aldarate metabolism
eng00061  Fatty acid biosynthesis
eng00071  Fatty acid degradation
eng00190  Oxidative phosphorylation
eng00220  Arginine biosynthesis
eng00250  Alanine, aspartate and glutamate metabolism
eng00280  Valine, leucine and isoleucine degradation
eng00350  Tyrosine metabolism
eng00470  D-Amino acid metabolism
eng00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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