KEGG   PATHWAY: epz00020
Entry
epz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Equus przewalskii (Przewalski's horse)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
epz00020  Citrate cycle (TCA cycle)
epz00020

Module
epz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:epz00020]
epz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:epz00020]
epz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:epz00020]
epz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:epz00020]
epz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:epz00020]
Other DBs
GO: 0006099
Organism
Equus przewalskii (Przewalski's horse) [GN:epz]
Gene
103557552  CS; citrate synthase [KO:K01647] [EC:2.3.3.1]
103550376  ACLY; ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
103550258  ACO1; aconitase 1 [KO:K01681] [EC:4.2.1.3]
103556118  ACO2; aconitase 2 [KO:K01681] [EC:4.2.1.3]
103558642  IDH2; isocitrate dehydrogenase (NADP(+)) 2, mitochondrial [KO:K00031] [EC:1.1.1.42]
103540344  IDH1; isocitrate dehydrogenase (NADP(+)) 1, cytosolic [KO:K00031] [EC:1.1.1.42]
103550963  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
103559296  IDH3A; isocitrate dehydrogenase 3 (NAD(+)) alpha [KO:K00030] [EC:1.1.1.41]
103541046  IDH3B; isocitrate dehydrogenase 3 (NAD(+)) beta [KO:K00030] [EC:1.1.1.41]
103545516  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial [KO:K00030] [EC:1.1.1.41]
103554947  OGDH; oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
103552166  OGDHL; oxoglutarate dehydrogenase-like [KO:K00164] [EC:1.2.4.2]
103548626  DLST; dihydrolipoamide S-succinyltransferase [KO:K00658] [EC:2.3.1.61]
103567993  DLD; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
103542431  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
103548272  SUCLG1; succinate-CoA ligase alpha subunit [KO:K01899] [EC:6.2.1.4 6.2.1.5]
103549439  SUCLA2; succinate-CoA ligase ADP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103557673  SUCLG2; succinate-CoA ligase GDP-forming beta subunit [KO:K01900] [EC:6.2.1.4 6.2.1.5]
103560327  SDHA; succinate dehydrogenase complex flavoprotein subunit A [KO:K00234] [EC:1.3.5.1]
103540492  SDHB; succinate dehydrogenase complex iron sulfur subunit B [KO:K00235] [EC:1.3.5.1]
103560002  SDHC; succinate dehydrogenase complex subunit C [KO:K00236]
103565881  SDHD; succinate dehydrogenase complex subunit D [KO:K00237]
103555158  fumarate hydratase, mitochondrial [KO:K01679] [EC:4.2.1.2]
103559025  FH; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
103561022  MDH1; malate dehydrogenase 1 [KO:K00025] [EC:1.1.1.37]
103560973  MDH2; malate dehydrogenase 2 [KO:K00026] [EC:1.1.1.37]
103560122  PC; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
103547049  PCK1; phosphoenolpyruvate carboxykinase 1 [KO:K01596] [EC:4.1.1.32]
103564017  PCK2; phosphoenolpyruvate carboxykinase 2, mitochondrial [KO:K01596] [EC:4.1.1.32]
103542533  PDHA1; pyruvate dehydrogenase (lipoamide) alpha 1 [KO:K00161] [EC:1.2.4.1]
103567729  pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial-like [KO:K00161] [EC:1.2.4.1]
103550724  PDHB; pyruvate dehydrogenase (lipoamide) beta [KO:K00162] [EC:1.2.4.1]
103555605  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
epz00010  Glycolysis / Gluconeogenesis
epz00053  Ascorbate and aldarate metabolism
epz00061  Fatty acid biosynthesis
epz00062  Fatty acid elongation
epz00071  Fatty acid degradation
epz00190  Oxidative phosphorylation
epz00220  Arginine biosynthesis
epz00250  Alanine, aspartate and glutamate metabolism
epz00280  Valine, leucine and isoleucine degradation
epz00350  Tyrosine metabolism
epz00470  D-Amino acid metabolism
epz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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