KEGG   PATHWAY: est00020
Entry
est00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Echinicola strongylocentroti
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
est00020  Citrate cycle (TCA cycle)
est00020

Module
est_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:est00020]
est_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:est00020]
est_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:est00020]
est_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:est00020]
est_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:est00020]
Other DBs
GO: 0006099
Organism
Echinicola strongylocentroti [GN:est]
Gene
DN752_22085  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
DN752_03890  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DN752_18675  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
DN752_04010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DN752_15185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DN752_10215  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DN752_10210  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
DN752_18215  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
DN752_10200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DN752_06195  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DN752_06645  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DN752_21190  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DN752_20320  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DN752_20325  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DN752_20315  succinate dehydrogenase [KO:K00241]
DN752_13055  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DN752_16025  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DN752_21500  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DN752_12710  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DN752_02440  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
DN752_02915  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
est00010  Glycolysis / Gluconeogenesis
est00053  Ascorbate and aldarate metabolism
est00061  Fatty acid biosynthesis
est00062  Fatty acid elongation
est00071  Fatty acid degradation
est00190  Oxidative phosphorylation
est00220  Arginine biosynthesis
est00250  Alanine, aspartate and glutamate metabolism
est00280  Valine, leucine and isoleucine degradation
est00350  Tyrosine metabolism
est00470  D-Amino acid metabolism
est00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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