KEGG   PATHWAY: fal00020
Entry
fal00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Frankia alni
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fal00020  Citrate cycle (TCA cycle)
fal00020

Module
fal_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fal00020]
fal_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fal00020]
fal_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fal00020]
fal_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fal00020]
fal_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fal00020]
Other DBs
GO: 0006099
Organism
Frankia alni [GN:fal]
Gene
FRAAL2379  citA1; citrate synthase [KO:K01647] [EC:2.3.3.1]
FRAAL2380  Putative citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
FRAAL0109  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
FRAAL0111  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
FRAAL2064  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
FRAAL3285  putative Aconitate hydratase B [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FRAAL3297  icd; Isocitrate dehydrogenase [NADP] (Oxalosuccinate decarboxylase) (IDH) [KO:K00031] [EC:1.1.1.42]
FRAAL5981  sucA; 2-oxoglutarate dehydrogenase, E1 component (SucA) [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
FRAAL3607  lpd; Dihydrolipoyl dehydrogenase (E3 component of alpha keto acid dehydrogenase complexes) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
FRAAL5151  lpdA; Dihydrolipoyl dehydrogenase (E3 component of branched-chain alpha-keto acid dehydrogenase complex) (LPD-Val) (Dihydrolipoamide dehydrogenase) [KO:K00382] [EC:1.8.1.4]
FRAAL1051  putative oxidoreductase,alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FRAAL6799  Ferredoxin oxidoreductase alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
FRAAL1050  putative oxidoreductase,beta-subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FRAAL6798  Ferredoxin oxidoreductase beta-subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
FRAAL1157  sucD; succinyl-CoA synthetase, alpha subunit, NAD(P)-binding [KO:K01902] [EC:6.2.1.5]
FRAAL1156  sucC; succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
FRAAL5654  sdhA; Succinate dehydrogenase flavoprotein subunit A [KO:K00239] [EC:1.3.5.1]
FRAAL1188  sdhA; succinate dehydrogenase, catalytic and NAD/flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FRAAL5655  sdhB; Succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
FRAAL1187  sdhB; succinate dehydrogenase, Fe-S protein [KO:K00240] [EC:1.3.5.1]
FRAAL5653  sdhC; Succinate dehydrogenase cytochrome B subunit [KO:K00241]
FRAAL1190  sdhC; succinate dehydrogenase membrane subunit [KO:K00241]
FRAAL1189  sdhD; Succinate dehydrogenase hydrophobic membrane anchor protein [KO:K00242]
FRAAL6152  fumC; fumarase C (fumarate hydratase Class II) [KO:K01679] [EC:4.2.1.2]
FRAAL5612  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FRAAL0680  Pyruvate carboxylase 2 (Pyruvic carboxylase 2) (PCB 2) [KO:K01958] [EC:6.4.1.1]
FRAAL6204  pckG; Phosphoenolpyruvate carboxykinase [GTP] (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) [KO:K01596] [EC:4.1.1.32]
FRAAL5051  aceE; pyruvate dehydrogenase, decarboxylase subunit, thiamin-binding [KO:K00163] [EC:1.2.4.1]
FRAAL4521  hypothetical protein; putative IMP dehydrogenase / GMP reductase domain [KO:K00163] [EC:1.2.4.1]
FRAAL5152  sucB; dihydrolipoamide succinyltransferase, component of 2-oxoglutarate dehydrogenase complex (E2) [KO:K00627] [EC:2.3.1.12]
FRAAL3253  Pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fal00010  Glycolysis / Gluconeogenesis
fal00053  Ascorbate and aldarate metabolism
fal00061  Fatty acid biosynthesis
fal00071  Fatty acid degradation
fal00190  Oxidative phosphorylation
fal00220  Arginine biosynthesis
fal00250  Alanine, aspartate and glutamate metabolism
fal00280  Valine, leucine and isoleucine degradation
fal00350  Tyrosine metabolism
fal00470  D-Amino acid metabolism
fal00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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