KEGG   PATHWAY: fap00020
Entry
fap00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Falsirhodobacter algicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fap00020  Citrate cycle (TCA cycle)
fap00020

Module
fap_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fap00020]
fap_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fap00020]
fap_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fap00020]
fap_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fap00020]
fap_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fap00020]
Other DBs
GO: 0006099
Organism
Falsirhodobacter algicola [GN:fap]
Gene
GR316_05275  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
GR316_03460  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
GR316_03400  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GR316_00390  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GR316_00395  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
GR316_00410  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GR316_02600  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GR316_04125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GR316_00385  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GR316_00380  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GR316_00345  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GR316_00330  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GR316_00355  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
GR316_00350  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
GR316_05930  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
GR316_00370  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GR316_12610  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GR316_09805  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
GR316_03130  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GR316_03125  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GR316_03120  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fap00010  Glycolysis / Gluconeogenesis
fap00053  Ascorbate and aldarate metabolism
fap00061  Fatty acid biosynthesis
fap00071  Fatty acid degradation
fap00190  Oxidative phosphorylation
fap00220  Arginine biosynthesis
fap00250  Alanine, aspartate and glutamate metabolism
fap00280  Valine, leucine and isoleucine degradation
fap00350  Tyrosine metabolism
fap00470  D-Amino acid metabolism
fap00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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