KEGG   PATHWAY: fax00020
Entry
fax00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fulvitalea axinellae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fax00020  Citrate cycle (TCA cycle)
fax00020

Module
fax_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fax00020]
fax_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fax00020]
fax_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fax00020]
fax_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fax00020]
fax_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fax00020]
Other DBs
GO: 0006099
Organism
Fulvitalea axinellae [GN:fax]
Gene
FUAX_14660  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
FUAX_22500  citrate synthase [KO:K01647] [EC:2.3.3.1]
FUAX_26860  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FUAX_28970  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FUAX_03770  leuB_1; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FUAX_19840  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
FUAX_36180  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
FUAX_36190  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FUAX_37080  bfmBB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FUAX_31170  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FUAX_36210  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FUAX_26660  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
FUAX_21390  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
FUAX_13000  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FUAX_12990  sdhB_2; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
FUAX_13010  sdhC; succinate dehydrogenase [KO:K00241]
FUAX_44740  fumA; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
FUAX_31790  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FUAX_36120  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FUAX_13740  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
FUAX_14270  pckA2; phosphoenolpyruvate carboxykinase [ATP] 2 [KO:K01610] [EC:4.1.1.49]
FUAX_01320  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FUAX_34850  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
FUAX_16510  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fax00010  Glycolysis / Gluconeogenesis
fax00053  Ascorbate and aldarate metabolism
fax00061  Fatty acid biosynthesis
fax00071  Fatty acid degradation
fax00190  Oxidative phosphorylation
fax00220  Arginine biosynthesis
fax00250  Alanine, aspartate and glutamate metabolism
fax00280  Valine, leucine and isoleucine degradation
fax00350  Tyrosine metabolism
fax00470  D-Amino acid metabolism
fax00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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