KEGG   PATHWAY: fay00020
Entry
fay00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavivirga abyssicola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fay00020  Citrate cycle (TCA cycle)
fay00020

Module
fay_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fay00020]
fay_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fay00020]
fay_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fay00020]
fay_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fay00020]
fay_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fay00020]
Other DBs
GO: 0006099
Organism
Flavivirga abyssicola [GN:fay]
Gene
Q4Q34_11615  citrate synthase [KO:K01647] [EC:2.3.3.1]
Q4Q34_00570  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Q4Q34_00075  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q4Q34_09315  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Q4Q34_01300  dihydrolipoamide acetyltransferase family protein [KO:K00658] [EC:2.3.1.61]
Q4Q34_09320  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
Q4Q34_15060  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q4Q34_19000  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Q4Q34_17175  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Q4Q34_14050  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Q4Q34_05600  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Q4Q34_05590  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Q4Q34_05605  succinate dehydrogenase cytochrome b subunit [KO:K00241]
Q4Q34_17755  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
Q4Q34_11765  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Q4Q34_10965  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Q4Q34_14815  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
Q4Q34_05225  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Q4Q34_14530  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Q4Q34_11130  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
Q4Q34_04335  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Q4Q34_11135  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fay00010  Glycolysis / Gluconeogenesis
fay00053  Ascorbate and aldarate metabolism
fay00061  Fatty acid biosynthesis
fay00071  Fatty acid degradation
fay00190  Oxidative phosphorylation
fay00220  Arginine biosynthesis
fay00250  Alanine, aspartate and glutamate metabolism
fay00280  Valine, leucine and isoleucine degradation
fay00350  Tyrosine metabolism
fay00470  D-Amino acid metabolism
fay00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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