KEGG   PATHWAY: faz00020
Entry
faz00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium azooxidireducens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
faz00020  Citrate cycle (TCA cycle)
faz00020

Module
faz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:faz00020]
faz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:faz00020]
faz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:faz00020]
Other DBs
GO: 0006099
Organism
Flavobacterium azooxidireducens [GN:faz]
Gene
M0M57_10100  citrate synthase [KO:K01647] [EC:2.3.3.1]
M0M57_00120  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
M0M57_01085  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M0M57_08245  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
M0M57_01695  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
M0M57_02600  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
M0M57_08260  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
M0M57_01505  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M0M57_01540  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M0M57_15430  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M0M57_00925  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M0M57_05570  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M0M57_05565  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M0M57_13940  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M0M57_13115  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M0M57_11395  acetyl-CoA carboxylase biotin carboxylase subunit [KO:K01959] [EC:6.4.1.1]
M0M57_01545  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
M0M57_08440  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
M0M57_03150  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M0M57_09330  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
M0M57_03155  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
faz00010  Glycolysis / Gluconeogenesis
faz00053  Ascorbate and aldarate metabolism
faz00061  Fatty acid biosynthesis
faz00071  Fatty acid degradation
faz00190  Oxidative phosphorylation
faz00220  Arginine biosynthesis
faz00250  Alanine, aspartate and glutamate metabolism
faz00280  Valine, leucine and isoleucine degradation
faz00350  Tyrosine metabolism
faz00470  D-Amino acid metabolism
faz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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