KEGG   PATHWAY: fbi00020
Entry
fbi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium bizetiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fbi00020  Citrate cycle (TCA cycle)
fbi00020

Module
fbi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fbi00020]
fbi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fbi00020]
fbi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fbi00020]
fbi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fbi00020]
fbi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fbi00020]
Other DBs
GO: 0006099
Organism
Flavobacterium bizetiae [GN:fbi]
Gene
L0669_01845  citrate synthase [KO:K01647] [EC:2.3.3.1]
L0669_10295  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
L0669_10290  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
L0669_11185  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
L0669_06375  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
L0669_06370  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
L0669_23250  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
L0669_10855  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L0669_14425  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L0669_21135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
L0669_16370  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
L0669_11080  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
L0669_03390  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L0669_14805  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
L0669_03385  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L0669_14800  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
L0669_03395  succinate dehydrogenase cytochrome b subunit [KO:K00241]
L0669_04635  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
L0669_21815  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
L0669_11590  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
L0669_13090  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
L0669_07035  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
L0669_08025  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
L0669_07600  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
L0669_08020  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fbi00010  Glycolysis / Gluconeogenesis
fbi00053  Ascorbate and aldarate metabolism
fbi00061  Fatty acid biosynthesis
fbi00071  Fatty acid degradation
fbi00190  Oxidative phosphorylation
fbi00220  Arginine biosynthesis
fbi00250  Alanine, aspartate and glutamate metabolism
fbi00280  Valine, leucine and isoleucine degradation
fbi00350  Tyrosine metabolism
fbi00470  D-Amino acid metabolism
fbi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system