KEGG   PATHWAY: fbt00020
Entry
fbt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flammeovirgaceae bacterium 311
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fbt00020  Citrate cycle (TCA cycle)
fbt00020

Module
fbt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fbt00020]
fbt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fbt00020]
fbt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fbt00020]
fbt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fbt00020]
fbt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fbt00020]
Other DBs
GO: 0006099
Organism
Flammeovirgaceae bacterium 311 [GN:fbt]
Gene
D770_01770  citrate synthase I, hexameric type [KO:K01647] [EC:2.3.3.1]
D770_26045  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
D770_08155  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
D770_12380  isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
D770_11125  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
D770_06600  hypothetical protein [KO:K00658] [EC:2.3.1.61]
D770_11130  2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
D770_09845  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
D770_11135  dihydrolipoyl dehydrogenanse [KO:K00382] [EC:1.8.1.4]
D770_10900  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
D770_04620  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
D770_06670  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
D770_06675  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
D770_06665  succinate dehydrogenase/fumarate reductase cytochrome b subunit, b558 family protein [KO:K00241]
D770_15950  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
D770_25405  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
D770_19580  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
D770_03515  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
D770_17720  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
D770_03730  pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit [KO:K00162] [EC:1.2.4.1]
D770_09275  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fbt00010  Glycolysis / Gluconeogenesis
fbt00053  Ascorbate and aldarate metabolism
fbt00061  Fatty acid biosynthesis
fbt00071  Fatty acid degradation
fbt00190  Oxidative phosphorylation
fbt00220  Arginine biosynthesis
fbt00250  Alanine, aspartate and glutamate metabolism
fbt00280  Valine, leucine and isoleucine degradation
fbt00350  Tyrosine metabolism
fbt00470  D-Amino acid metabolism
fbt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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