KEGG   PATHWAY: fco00020
Entry
fco00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium columnare
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fco00020  Citrate cycle (TCA cycle)
fco00020

Module
fco_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fco00020]
fco_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fco00020]
fco_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fco00020]
fco_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fco00020]
fco_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fco00020]
Other DBs
GO: 0006099
Organism
Flavobacterium columnare [GN:fco]
Gene
FCOL_03580  citrate synthase [KO:K01647] [EC:2.3.3.1]
FCOL_04650  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FCOL_12465  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
FCOL_09585  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FCOL_12100  dihydrolipoyllysine-residue(2-methylpropanoyl)tr ansferase [KO:K00658] [EC:2.3.1.61]
FCOL_09580  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
FCOL_00910  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCOL_01135  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FCOL_00280  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
FCOL_00945  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
FCOL_09145  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FCOL_09150  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FCOL_09140  succinate dehydrogenase cytochrome B subunit [KO:K00241]
FCOL_08285  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
FCOL_06830  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FCOL_06155  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
FCOL_09055  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FCOL_10875  pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FCOL_04100  Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FCOL_10870  pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fco00010  Glycolysis / Gluconeogenesis
fco00053  Ascorbate and aldarate metabolism
fco00061  Fatty acid biosynthesis
fco00071  Fatty acid degradation
fco00190  Oxidative phosphorylation
fco00220  Arginine biosynthesis
fco00250  Alanine, aspartate and glutamate metabolism
fco00280  Valine, leucine and isoleucine degradation
fco00350  Tyrosine metabolism
fco00470  D-Amino acid metabolism
fco00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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