KEGG   PATHWAY: fcv00020
Entry
fcv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium covae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fcv00020  Citrate cycle (TCA cycle)
fcv00020

Module
fcv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fcv00020]
fcv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fcv00020]
fcv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fcv00020]
fcv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fcv00020]
fcv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fcv00020]
Other DBs
GO: 0006099
Organism
Flavobacterium covae [GN:fcv]
Gene
AWN65_10560  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AWN65_09085  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AWN65_08460  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AWN65_13215  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AWN65_08035  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
AWN65_13220  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
AWN65_04745  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWN65_06450  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AWN65_07800  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AWN65_06690  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AWN65_13855  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AWN65_13850  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AWN65_13860  succinate dehydrogenase [KO:K00241]
AWN65_00300  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AWN65_04265  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AWN65_07555  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AWN65_13945  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AWN65_09855  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AWN65_11705  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AWN65_09850  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fcv00010  Glycolysis / Gluconeogenesis
fcv00053  Ascorbate and aldarate metabolism
fcv00061  Fatty acid biosynthesis
fcv00071  Fatty acid degradation
fcv00190  Oxidative phosphorylation
fcv00220  Arginine biosynthesis
fcv00250  Alanine, aspartate and glutamate metabolism
fcv00280  Valine, leucine and isoleucine degradation
fcv00350  Tyrosine metabolism
fcv00470  D-Amino acid metabolism
fcv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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