KEGG   PATHWAY: fcv03430
Entry
fcv03430                    Pathway                                
Name
Mismatch repair - Flavobacterium covae
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
fcv03430  Mismatch repair
fcv03430

Other DBs
GO: 0006298
Organism
Flavobacterium covae [GN:fcv]
Gene
AWN65_12155  DNA mismatch repair protein MutS [KO:K03555]
AWN65_04835  DNA mismatch repair protein MutS [KO:K07456]
AWN65_08285  DNA mismatch repair protein MutL [KO:K03572]
AWN65_07435  ATP-dependent DNA helicase [KO:K03657] [EC:5.6.2.4]
AWN65_06645  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
AWN65_00050  single-stranded DNA-binding protein [KO:K03111]
AWN65_01510  single-stranded DNA-binding protein [KO:K03111]
AWN65_12710  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
AWN65_10110  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
AWN65_07285  DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
AWN65_04810  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
AWN65_14160  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
AWN65_02465  exonuclease [KO:K02342] [EC:2.7.7.7]
AWN65_05295  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AWN65_08030  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
AWN65_06255  DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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