KEGG   PATHWAY: feh00020
Entry
feh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium enshiense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
feh00020  Citrate cycle (TCA cycle)
feh00020

Module
feh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:feh00020]
feh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:feh00020]
Other DBs
GO: 0006099
Organism
Flavobacterium enshiense [GN:feh]
Gene
LZF87_06350  citrate synthase [KO:K01647] [EC:2.3.3.1]
LZF87_00080  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LZF87_00085  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LZF87_13430  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LZF87_04470  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LZF87_00375  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
LZF87_04475  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LZF87_07335  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
LZF87_09430  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LZF87_11450  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LZF87_10655  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LZF87_13515  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LZF87_04080  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LZF87_04085  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LZF87_03685  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LZF87_09640  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LZF87_07995  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LZF87_07710  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LZF87_03250  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LZF87_04760  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LZF87_05795  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LZF87_05355  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LZF87_05800  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
feh00010  Glycolysis / Gluconeogenesis
feh00061  Fatty acid biosynthesis
feh00071  Fatty acid degradation
feh00190  Oxidative phosphorylation
feh00220  Arginine biosynthesis
feh00250  Alanine, aspartate and glutamate metabolism
feh00280  Valine, leucine and isoleucine degradation
feh00350  Tyrosine metabolism
feh00470  D-Amino acid metabolism
feh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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