KEGG   PATHWAY: fhu00020
Entry
fhu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium humidisoli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fhu00020  Citrate cycle (TCA cycle)
fhu00020

Module
fhu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fhu00020]
fhu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fhu00020]
fhu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fhu00020]
fhu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fhu00020]
fhu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fhu00020]
Other DBs
GO: 0006099
Organism
Flavobacterium humidisoli [GN:fhu]
Gene
M0M44_01815  citrate synthase [KO:K01647] [EC:2.3.3.1]
M0M44_10160  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
M0M44_10155  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M0M44_12410  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M0M44_06475  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
M0M44_23405  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
M0M44_06465  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
M0M44_21715  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M0M44_12180  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M0M44_17120  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M0M44_12315  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M0M44_03640  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M0M44_15630  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M0M44_03635  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M0M44_15625  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
M0M44_03645  succinate dehydrogenase cytochrome b subunit [KO:K00241]
M0M44_04665  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M0M44_22275  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M0M44_12775  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M0M44_14170  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
M0M44_07070  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
M0M44_07980  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
M0M44_07605  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
M0M44_07975  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fhu00010  Glycolysis / Gluconeogenesis
fhu00053  Ascorbate and aldarate metabolism
fhu00061  Fatty acid biosynthesis
fhu00071  Fatty acid degradation
fhu00190  Oxidative phosphorylation
fhu00220  Arginine biosynthesis
fhu00250  Alanine, aspartate and glutamate metabolism
fhu00280  Valine, leucine and isoleucine degradation
fhu00350  Tyrosine metabolism
fhu00470  D-Amino acid metabolism
fhu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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