KEGG   PATHWAY: fin00020
Entry
fin00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium indicum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fin00020  Citrate cycle (TCA cycle)
fin00020

Module
fin_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fin00020]
fin_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fin00020]
fin_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fin00020]
fin_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fin00020]
fin_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fin00020]
Other DBs
GO: 0006099
Organism
Flavobacterium indicum [GN:fin]
Gene
KQS_02960  gltA; Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
KQS_10245  acnA; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KQS_10250  Aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
KQS_07990  icd1; Isocitrate dehydrogenase (NADP+) [KO:K00031] [EC:1.1.1.42]
KQS_04390  icd2; Monomeric isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
KQS_01150  sucA; Oxoglutarate dehydrogenase (succinyl-transferring) [KO:K00164] [EC:1.2.4.2]
KQS_01145  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
KQS_10180  bfmBB; Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase [KO:K00658] [EC:2.3.1.61]
KQS_04140  lpdA1; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KQS_07390  lpdA2; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KQS_07025  sucD; Succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
KQS_05630  sucC; Succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
KQS_13410  sdhA; Succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KQS_13405  sdhB; Succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
KQS_13415  sdhC; Probable Succinate dehydrogenase, cytochrome b subunit [KO:K00241]
KQS_13655  fumA; Fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
KQS_07850  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KQS_08775  mqo; Malate dehydrogenase (acceptor) [KO:K00116] [EC:1.1.5.4]
KQS_13200  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KQS_03190  pdhA; Pyruvate dehydrogenase E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
KQS_02335  pdhB; Pyruvate dehydrogenase E1 component, beta subunit [KO:K00162] [EC:1.2.4.1]
KQS_03195  pdhC; Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fin00010  Glycolysis / Gluconeogenesis
fin00061  Fatty acid biosynthesis
fin00071  Fatty acid degradation
fin00190  Oxidative phosphorylation
fin00220  Arginine biosynthesis
fin00250  Alanine, aspartate and glutamate metabolism
fin00280  Valine, leucine and isoleucine degradation
fin00350  Tyrosine metabolism
fin00470  D-Amino acid metabolism
fin00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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