KEGG   PATHWAY: fjo00020
Entry
fjo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium johnsoniae UW101
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fjo00020  Citrate cycle (TCA cycle)
fjo00020

Module
fjo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fjo00020]
fjo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fjo00020]
fjo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fjo00020]
fjo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fjo00020]
fjo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fjo00020]
Other DBs
GO: 0006099
Organism
Flavobacterium johnsoniae UW101 [GN:fjo]
Gene
Fjoh_0367  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Fjoh_1952  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Fjoh_1951  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Fjoh_2181  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Fjoh_1256  kgd; 2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Fjoh_4988  catalytic domain of components of various dehydrogenase complexes [KO:K00658] [EC:2.3.1.61]
Fjoh_1255  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Fjoh_2133  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Fjoh_4676  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Fjoh_2898  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Fjoh_2162  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Fjoh_3325  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Fjoh_0676  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Fjoh_0675  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Fjoh_3326  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Fjoh_0677  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Fjoh_0881  fumarase [KO:K01676] [EC:4.2.1.2]
Fjoh_4786  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Fjoh_2255  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Fjoh_2529  malate--quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
Fjoh_1366  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Fjoh_1553  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00161] [EC:1.2.4.1]
Fjoh_1475  Transketolase, central region [KO:K00162] [EC:1.2.4.1]
Fjoh_1552  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fjo00010  Glycolysis / Gluconeogenesis
fjo00053  Ascorbate and aldarate metabolism
fjo00061  Fatty acid biosynthesis
fjo00071  Fatty acid degradation
fjo00190  Oxidative phosphorylation
fjo00220  Arginine biosynthesis
fjo00250  Alanine, aspartate and glutamate metabolism
fjo00280  Valine, leucine and isoleucine degradation
fjo00350  Tyrosine metabolism
fjo00470  D-Amino acid metabolism
fjo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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