KEGG   PATHWAY: fka00020
Entry
fka00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flammeovirga kamogawensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fka00020  Citrate cycle (TCA cycle)
fka00020

Module
fka_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fka00020]
fka_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fka00020]
fka_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fka00020]
fka_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fka00020]
fka_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fka00020]
Other DBs
GO: 0006099
Organism
Flammeovirga kamogawensis [GN:fka]
Gene
KM029_03255  citrate synthase [KO:K01647] [EC:2.3.3.1]
KM029_15775  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KM029_17315  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KM029_01395  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KM029_01405  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KM029_10085  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
KM029_01410  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KM029_11225  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KM029_15965  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KM029_03245  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KM029_17735  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KM029_17740  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KM029_17730  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KM029_13070  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
KM029_03295  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KM029_20865  hypothetical protein [KO:K00024] [EC:1.1.1.37]
KM029_07460  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KM029_11955  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KM029_09680  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KM029_17180  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
KM029_23925  2-oxoacid:acceptor oxidoreductase family protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fka00010  Glycolysis / Gluconeogenesis
fka00053  Ascorbate and aldarate metabolism
fka00061  Fatty acid biosynthesis
fka00071  Fatty acid degradation
fka00190  Oxidative phosphorylation
fka00220  Arginine biosynthesis
fka00250  Alanine, aspartate and glutamate metabolism
fka00280  Valine, leucine and isoleucine degradation
fka00350  Tyrosine metabolism
fka00470  D-Amino acid metabolism
fka00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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