KEGG   PATHWAY: flc00030
Entry
flc00030                    Pathway                                
Name
Pentose phosphate pathway - Flavihumibacter fluvii
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
flc00030  Pentose phosphate pathway
flc00030

Module
flc_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:flc00030]
flc_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:flc00030]
flc_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:flc00030]
flc_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:flc00030]
flc_M00631  D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH:flc00030]
Other DBs
GO: 0006098
Organism
Flavihumibacter fluvii [GN:flc]
Gene
KJS93_05945  pgi; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
KJS93_15820  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
KJS93_01850  zwf; glucose-6-phosphate dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
KJS93_15825  pgl; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
KJS93_05085  lactonase family protein [KO:K07404] [EC:3.1.1.31]
KJS93_15815  gndA; NADP-dependent phosphogluconate dehydrogenase [KO:K00033] [EC:1.1.1.44 1.1.1.343]
KJS93_04755  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
KJS93_13745  transketolase [KO:K00615] [EC:2.2.1.1]
KJS93_20610  transketolase family protein [KO:K00615] [EC:2.2.1.1]
KJS93_04510  fsa; fructose-6-phosphate aldolase [KO:K00616] [EC:2.2.1.2]
KJS93_04210  rpiA; ribose-5-phosphate isomerase RpiA [KO:K01807] [EC:5.3.1.6]
KJS93_17290  rpiB; ribose 5-phosphate isomerase B [KO:K01808] [EC:5.3.1.6]
KJS93_07410  orotidine 5'-phosphate decarboxylase [KO:K08093] [EC:4.1.2.43]
KJS93_00680  deoC; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
KJS93_06415  rbsK; ribokinase [KO:K00852] [EC:2.7.1.15]
KJS93_06240  phospho-sugar mutase [KO:K01835] [EC:5.4.2.2]
KJS93_01730  ribose-phosphate pyrophosphokinase [KO:K00948] [EC:2.7.6.1]
KJS93_04390  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KJS93_06915  eda; bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
KJS93_07275  glucose 1-dehydrogenase [KO:K22969] [EC:1.1.1.47]
KJS93_10290  PQQ-binding-like beta-propeller repeat protein [KO:K00117] [EC:1.1.5.2]
KJS93_15635  pyrroloquinoline quinone-dependent dehydrogenase [KO:K00117] [EC:1.1.5.2]
KJS93_09830  SMP-30/gluconolactonase/LRE family protein [KO:K01053] [EC:3.1.1.17]
KJS93_04335  gluconokinase [KO:K25031] [EC:2.7.1.12]
KJS93_04385  sugar kinase [KO:K00874] [EC:2.7.1.45]
KJS93_02295  DUF4147 domain-containing protein [KO:K11529] [EC:2.7.1.165]
KJS93_01520  class I fructose-bisphosphate aldolase [KO:K11645] [EC:4.1.2.13]
KJS93_20245  class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
KJS93_01525  fbaA; class II fructose-bisphosphate aldolase [KO:K01624] [EC:4.1.2.13]
KJS93_08400  fbp; class 1 fructose-bisphosphatase [KO:K03841] [EC:3.1.3.11]
KJS93_05470  pfkA; 6-phosphofructokinase [KO:K00850] [EC:2.7.1.11]
KJS93_05715  hexose kinase [KO:K16370] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
flc00010  Glycolysis / Gluconeogenesis
flc00040  Pentose and glucuronate interconversions
flc00052  Galactose metabolism
flc00230  Purine metabolism
flc00240  Pyrimidine metabolism
flc00340  Histidine metabolism
flc00630  Glyoxylate and dicarboxylate metabolism
flc00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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