KEGG   PATHWAY: flu00020
Entry
flu00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Candidatus Fluviicola riflensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
flu00020  Citrate cycle (TCA cycle)
flu00020

Module
flu_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:flu00020]
flu_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:flu00020]
flu_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:flu00020]
flu_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:flu00020]
flu_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:flu00020]
Other DBs
GO: 0006099
Organism
Candidatus Fluviicola riflensis [GN:flu]
Gene
CHH17_04985  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CHH17_15500  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CHH17_14040  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CHH17_17575  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CHH17_17570  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CHH17_04635  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
CHH17_05040  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHH17_09695  pyridine nucleotide-disulfide oxidoreductase [KO:K00382] [EC:1.8.1.4]
CHH17_02600  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHH17_07275  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CHH17_13020  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CHH17_18415  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CHH17_18410  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CHH17_18420  succinate dehydrogenase [KO:K00241]
CHH17_17805  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CHH17_06380  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CHH17_07585  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CHH17_12830  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CHH17_05115  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
CHH17_14350  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
CHH17_05120  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
flu00010  Glycolysis / Gluconeogenesis
flu00053  Ascorbate and aldarate metabolism
flu00061  Fatty acid biosynthesis
flu00071  Fatty acid degradation
flu00190  Oxidative phosphorylation
flu00220  Arginine biosynthesis
flu00250  Alanine, aspartate and glutamate metabolism
flu00280  Valine, leucine and isoleucine degradation
flu00350  Tyrosine metabolism
flu00470  D-Amino acid metabolism
flu00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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