KEGG   PATHWAY: flv00020
Entry
flv00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavihumibacter rivuli
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
flv00020  Citrate cycle (TCA cycle)
flv00020

Module
flv_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:flv00020]
flv_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:flv00020]
flv_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:flv00020]
flv_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:flv00020]
flv_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:flv00020]
Other DBs
GO: 0006099
Organism
Flavihumibacter rivuli [GN:flv]
Gene
KJS94_08545  citrate (Si)-synthase, eukaryotic [KO:K01647] [EC:2.3.3.1]
KJS94_01540  aconitate hydratase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
KJS94_03735  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
KJS94_16915  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KJS94_08310  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KJS94_07255  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
KJS94_08305  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KJS94_07200  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KJS94_15950  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KJS94_12300  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KJS94_00180  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KJS94_03135  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KJS94_05955  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KJS94_05945  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KJS94_05960  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KJS94_09985  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KJS94_01325  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KJS94_08610  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KJS94_14175  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
KJS94_05260  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KJS94_05365  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KJS94_04785  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KJS94_05265  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KJS94_17730  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
flv00010  Glycolysis / Gluconeogenesis
flv00053  Ascorbate and aldarate metabolism
flv00061  Fatty acid biosynthesis
flv00071  Fatty acid degradation
flv00190  Oxidative phosphorylation
flv00220  Arginine biosynthesis
flv00250  Alanine, aspartate and glutamate metabolism
flv00280  Valine, leucine and isoleucine degradation
flv00350  Tyrosine metabolism
flv00470  D-Amino acid metabolism
flv00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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