KEGG   PATHWAY: flw00020
Entry
flw00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fulvivirga ligni
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
flw00020  Citrate cycle (TCA cycle)
flw00020

Module
flw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:flw00020]
flw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:flw00020]
flw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:flw00020]
flw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:flw00020]
flw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:flw00020]
Other DBs
GO: 0006099
Organism
Fulvivirga ligni [GN:flw]
Gene
LVD16_12100  citrate synthase [KO:K01647] [EC:2.3.3.1]
LVD16_11240  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LVD16_01010  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LVD16_05155  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LVD16_05150  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LVD16_09985  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
LVD16_05145  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LVD16_05755  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LVD16_22550  NAD(P)/FAD-dependent oxidoreductase [KO:K00382] [EC:1.8.1.4]
LVD16_26265  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LVD16_11775  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LVD16_24215  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LVD16_24220  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LVD16_24210  succinate dehydrogenase cytochrome b subunit [KO:K00241]
LVD16_02475  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LVD16_26700  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LVD16_21150  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
LVD16_15195  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LVD16_18180  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
LVD16_00990  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LVD16_11375  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LVD16_21665  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
flw00010  Glycolysis / Gluconeogenesis
flw00053  Ascorbate and aldarate metabolism
flw00061  Fatty acid biosynthesis
flw00071  Fatty acid degradation
flw00190  Oxidative phosphorylation
flw00220  Arginine biosynthesis
flw00250  Alanine, aspartate and glutamate metabolism
flw00280  Valine, leucine and isoleucine degradation
flw00350  Tyrosine metabolism
flw00470  D-Amino acid metabolism
flw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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