KEGG   PATHWAY: fok00020
Entry
fok00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium okayamense
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fok00020  Citrate cycle (TCA cycle)
fok00020

Module
fok_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fok00020]
fok_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fok00020]
fok_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fok00020]
fok_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fok00020]
fok_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fok00020]
Other DBs
GO: 0006099
Organism
Flavobacterium okayamense [GN:fok]
Gene
KK2020170_01610  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
KK2020170_00150  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KK2020170_11780  leuB; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KK2020170_16250  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
KK2020170_08700  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
KK2020170_08710  sucB; dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
KK2020170_14130  bfmBB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
KK2020170_15030  lpdA2; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KK2020170_18880  lpdA1; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KK2020170_16720  sucD; succinate--CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
KK2020170_24060  sucC; succinate--CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
KK2020170_05280  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
KK2020170_05270  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
KK2020170_05290  hypothetical protein [KO:K00241]
KK2020170_07420  fumB; fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
KK2020170_20790  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
KK2020170_15970  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KK2020170_09110  pckA; phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
KK2020170_11150  pdhA; pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KK2020170_03310  pdhB; pyruvate dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
KK2020170_11160  pdhC; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fok00010  Glycolysis / Gluconeogenesis
fok00061  Fatty acid biosynthesis
fok00071  Fatty acid degradation
fok00190  Oxidative phosphorylation
fok00220  Arginine biosynthesis
fok00250  Alanine, aspartate and glutamate metabolism
fok00280  Valine, leucine and isoleucine degradation
fok00350  Tyrosine metabolism
fok00470  D-Amino acid metabolism
fok00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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