KEGG   PATHWAY: fop00020
Entry
fop00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Formosa sediminum
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fop00020  Citrate cycle (TCA cycle)
fop00020

Module
fop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fop00020]
fop_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fop00020]
fop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fop00020]
fop_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fop00020]
fop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fop00020]
Other DBs
GO: 0006099
Organism
Formosa sediminum [GN:fop]
Gene
FNB79_07475  citrate synthase [KO:K01647] [EC:2.3.3.1]
FNB79_09230  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FNB79_09225  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
FNB79_00060  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FNB79_03090  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FNB79_03085  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
FNB79_08835  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
FNB79_08380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FNB79_12750  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FNB79_13840  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FNB79_08075  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FNB79_05460  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FNB79_05465  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FNB79_05455  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FNB79_14125  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FNB79_07705  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FNB79_05805  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
FNB79_01395  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
FNB79_02440  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
FNB79_01390  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fop00010  Glycolysis / Gluconeogenesis
fop00053  Ascorbate and aldarate metabolism
fop00061  Fatty acid biosynthesis
fop00071  Fatty acid degradation
fop00190  Oxidative phosphorylation
fop00220  Arginine biosynthesis
fop00250  Alanine, aspartate and glutamate metabolism
fop00280  Valine, leucine and isoleucine degradation
fop00350  Tyrosine metabolism
fop00470  D-Amino acid metabolism
fop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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