KEGG   PATHWAY: for00020
Entry
for00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Formosa sp. Hel1_33_131
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
for00020  Citrate cycle (TCA cycle)
for00020

Module
for_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:for00020]
for_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:for00020]
for_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:for00020]
for_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:for00020]
for_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:for00020]
Other DBs
GO: 0006099
Organism
Formosa sp. Hel1_33_131 [GN:for]
Gene
FORMB_06970  citrate synthase, type II [KO:K01647] [EC:2.3.3.1]
FORMB_05020  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FORMB_04170  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FORMB_14770  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
FORMB_14780  2-oxoglutarate dehydrogenase E2 component [KO:K00658] [EC:2.3.1.61]
FORMB_03740  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
FORMB_01040  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FORMB_01250  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
FORMB_00240  succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
FORMB_02680  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
FORMB_09450  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FORMB_09460  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FORMB_09440  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FORMB_22890  fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
FORMB_18340  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FORMB_09070  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
FORMB_18090  pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
FORMB_09930  pyruvate dehydrogenase E1 component beta subunit [KO:K00162] [EC:1.2.4.1]
FORMB_18080  dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
for00010  Glycolysis / Gluconeogenesis
for00053  Ascorbate and aldarate metabolism
for00061  Fatty acid biosynthesis
for00071  Fatty acid degradation
for00190  Oxidative phosphorylation
for00220  Arginine biosynthesis
for00250  Alanine, aspartate and glutamate metabolism
for00280  Valine, leucine and isoleucine degradation
for00350  Tyrosine metabolism
for00470  D-Amino acid metabolism
for00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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