KEGG   PATHWAY: fpk00020
Entry
fpk00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium psychrophilum v4-33
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fpk00020  Citrate cycle (TCA cycle)
fpk00020

Module
fpk_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fpk00020]
fpk_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fpk00020]
fpk_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fpk00020]
fpk_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fpk00020]
fpk_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fpk00020]
Other DBs
GO: 0006099
Organism
Flavobacterium psychrophilum v4-33 [GN:fpk]
Gene
IA06_06215  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
IA06_05490  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IA06_09070  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
IA06_11905  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
IA06_11910  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
IA06_02915  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
IA06_03485  hypothetical protein [KO:K00382] [EC:1.8.1.4]
IA06_08355  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
IA06_04515  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
IA06_04200  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
IA06_00410  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
IA06_00420  fumarate reductase [KO:K00240] [EC:1.3.5.1]
IA06_00405  succinate dehydrogenase [KO:K00241]
IA06_07690  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
IA06_02590  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IA06_08440  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
IA06_11740  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
IA06_06605  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
IA06_01620  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
IA06_06600  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fpk00010  Glycolysis / Gluconeogenesis
fpk00053  Ascorbate and aldarate metabolism
fpk00061  Fatty acid biosynthesis
fpk00071  Fatty acid degradation
fpk00190  Oxidative phosphorylation
fpk00220  Arginine biosynthesis
fpk00250  Alanine, aspartate and glutamate metabolism
fpk00280  Valine, leucine and isoleucine degradation
fpk00350  Tyrosine metabolism
fpk00470  D-Amino acid metabolism
fpk00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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