KEGG   PATHWAY: fpn00020
Entry
fpn00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fictibacillus phosphorivorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fpn00020  Citrate cycle (TCA cycle)
fpn00020

Module
fpn_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fpn00020]
fpn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fpn00020]
fpn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fpn00020]
fpn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fpn00020]
fpn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fpn00020]
Other DBs
GO: 0006099
Organism
Fictibacillus phosphorivorans [GN:fpn]
Gene
ABE65_015490  citrate synthase [KO:K01647] [EC:2.3.3.1]
ABE65_017930  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
ABE65_009260  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ABE65_015485  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
ABE65_009665  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
ABE65_009670  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ABE65_003885  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABE65_007845  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABE65_013715  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABE65_009030  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
ABE65_009035  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
ABE65_008560  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
ABE65_008555  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
ABE65_015240  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
ABE65_015235  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ABE65_015245  succinate dehydrogenase [KO:K00241]
ABE65_002475  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ABE65_015480  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABE65_010865  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ABE65_007940  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
ABE65_016050  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
ABE65_007830  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
ABE65_007835  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
ABE65_007840  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fpn00010  Glycolysis / Gluconeogenesis
fpn00053  Ascorbate and aldarate metabolism
fpn00061  Fatty acid biosynthesis
fpn00071  Fatty acid degradation
fpn00190  Oxidative phosphorylation
fpn00220  Arginine biosynthesis
fpn00250  Alanine, aspartate and glutamate metabolism
fpn00280  Valine, leucine and isoleucine degradation
fpn00350  Tyrosine metabolism
fpn00470  D-Amino acid metabolism
fpn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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