KEGG   PATHWAY: fpsz00020
Entry
fpsz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Flavobacterium psychrophilum Z2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fpsz00020  Citrate cycle (TCA cycle)
fpsz00020

Module
fpsz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fpsz00020]
fpsz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fpsz00020]
fpsz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fpsz00020]
fpsz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fpsz00020]
fpsz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fpsz00020]
Other DBs
GO: 0006099
Organism
Flavobacterium psychrophilum Z2 [GN:fpsz]
Gene
AMR72_13755  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AMR72_06115  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AMR72_04360  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AMR72_08690  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
AMR72_14810  diapophytoene dehydrogenase [KO:K00658] [EC:2.3.1.61]
AMR72_08685  2-oxoglutarate dehydrogenase [KO:K00658] [EC:2.3.1.61]
AMR72_17905  hypothetical protein [KO:K00382] [EC:1.8.1.4]
AMR72_01225  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AMR72_01105  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
AMR72_00190  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
AMR72_11240  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
AMR72_11245  fumarate reductase [KO:K00240] [EC:1.3.5.1]
AMR72_11235  succinate dehydrogenase [KO:K00241]
AMR72_03445  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AMR72_04740  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AMR72_04985  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
AMR72_08175  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AMR72_13245  pyruvate dehydrogenase [KO:K00161] [EC:1.2.4.1]
AMR72_07315  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AMR72_13250  pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fpsz00010  Glycolysis / Gluconeogenesis
fpsz00053  Ascorbate and aldarate metabolism
fpsz00061  Fatty acid biosynthesis
fpsz00071  Fatty acid degradation
fpsz00190  Oxidative phosphorylation
fpsz00220  Arginine biosynthesis
fpsz00250  Alanine, aspartate and glutamate metabolism
fpsz00280  Valine, leucine and isoleucine degradation
fpsz00350  Tyrosine metabolism
fpsz00470  D-Amino acid metabolism
fpsz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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