KEGG   PATHWAY: fsl00020
Entry
fsl00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Flaviflexus salsibiostraticola
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fsl00020  Citrate cycle (TCA cycle)
fsl00020

Module
fsl_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fsl00020]
fsl_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fsl00020]
fsl_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fsl00020]
fsl_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fsl00020]
fsl_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fsl00020]
Other DBs
GO: 0006099
Organism
Flaviflexus salsibiostraticola [GN:fsl]
Gene
EJO69_08095  citrate synthase [KO:K01647] [EC:2.3.3.1]
EJO69_01450  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
EJO69_11180  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EJO69_06090  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
EJO69_01135  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EJO69_04700  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EJO69_04705  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EJO69_00055  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EJO69_00675  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EJO69_00060  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EJO69_00680  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EJO69_00050  succinate dehydrogenase cytochrome b subunit [KO:K00241]
EJO69_00670  succinate dehydrogenase cytochrome b subunit [KO:K00241]
EJO69_00120  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EJO69_04620  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EJO69_07090  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
EJO69_00775  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EJO69_01130  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
EJO69_06505  2-oxo acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fsl00010  Glycolysis / Gluconeogenesis
fsl00053  Ascorbate and aldarate metabolism
fsl00061  Fatty acid biosynthesis
fsl00071  Fatty acid degradation
fsl00190  Oxidative phosphorylation
fsl00220  Arginine biosynthesis
fsl00250  Alanine, aspartate and glutamate metabolism
fsl00280  Valine, leucine and isoleucine degradation
fsl00350  Tyrosine metabolism
fsl00470  D-Amino acid metabolism
fsl00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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