KEGG   PATHWAY: fte00020
Entry
fte00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fluviicola taffensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fte00020  Citrate cycle (TCA cycle)
fte00020

Module
fte_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fte00020]
fte_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fte00020]
fte_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fte00020]
fte_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fte00020]
fte_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fte00020]
Other DBs
GO: 0006099
Organism
Fluviicola taffensis [GN:fte]
Gene
Fluta_2738  citrate synthase [KO:K01647] [EC:2.3.3.1]
Fluta_0968  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
Fluta_0971  aconitase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Fluta_0743  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Fluta_1299  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Fluta_1300  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Fluta_2651  Dihydrolipoyllysine-residue acetyltransferase [KO:K00658] [EC:2.3.1.61]
Fluta_2749  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Fluta_2255  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Fluta_3279  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Fluta_3899  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Fluta_0502  Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
Fluta_1492  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Fluta_1493  ferredoxin [KO:K00240] [EC:1.3.5.1]
Fluta_1491  hypothetical protein [KO:K00241]
Fluta_0375  fumarase [KO:K01676] [EC:4.2.1.2]
Fluta_0312  Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Fluta_3158  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
Fluta_3624  Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
Fluta_2761  pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit [KO:K00161] [EC:1.2.4.1]
Fluta_0839  Pyruvate dehydrogenase (acetyl-transferring) [KO:K00162] [EC:1.2.4.1]
Fluta_2762  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fte00010  Glycolysis / Gluconeogenesis
fte00053  Ascorbate and aldarate metabolism
fte00061  Fatty acid biosynthesis
fte00071  Fatty acid degradation
fte00190  Oxidative phosphorylation
fte00220  Arginine biosynthesis
fte00250  Alanine, aspartate and glutamate metabolism
fte00280  Valine, leucine and isoleucine degradation
fte00350  Tyrosine metabolism
fte00470  D-Amino acid metabolism
fte00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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