KEGG   PATHWAY: fyt00020
Entry
fyt00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Fuscovulum ytuae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
fyt00020  Citrate cycle (TCA cycle)
fyt00020

Module
fyt_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:fyt00020]
fyt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:fyt00020]
fyt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:fyt00020]
fyt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:fyt00020]
fyt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:fyt00020]
Other DBs
GO: 0006099
Organism
Fuscovulum ytuae [GN:fyt]
Gene
QF092_05385  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
QF092_04695  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
QF092_03940  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QF092_08960  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QF092_08965  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QF092_03490  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF092_08975  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QF092_08950  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QF092_08945  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QF092_08880  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QF092_08865  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QF092_08890  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QF092_08885  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QF092_01160  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QF092_08925  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QF092_07750  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
QF092_15430  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
QF092_04525  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
QF092_04530  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
QF092_04535  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
fyt00010  Glycolysis / Gluconeogenesis
fyt00053  Ascorbate and aldarate metabolism
fyt00061  Fatty acid biosynthesis
fyt00071  Fatty acid degradation
fyt00190  Oxidative phosphorylation
fyt00220  Arginine biosynthesis
fyt00250  Alanine, aspartate and glutamate metabolism
fyt00280  Valine, leucine and isoleucine degradation
fyt00350  Tyrosine metabolism
fyt00470  D-Amino acid metabolism
fyt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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