KEGG   PATHWAY: gae00020
Entry
gae00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Gigantopelta aegis (peltospirid snail)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gae00020  Citrate cycle (TCA cycle)
gae00020

Module
gae_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gae00020]
gae_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gae00020]
gae_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gae00020]
gae_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gae00020]
gae_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gae00020]
Other DBs
GO: 0006099
Organism
Gigantopelta aegis (peltospirid snail) [GN:gae]
Gene
121381883  probable citrate synthase 2, mitochondrial isoform X1 [KO:K01647] [EC:2.3.3.1]
121392731  LOW QUALITY PROTEIN: ATP-citrate synthase-like [KO:K01648] [EC:2.3.3.8]
121381892  ATP-citrate synthase-like isoform X1 [KO:K01648] [EC:2.3.3.8]
121379059  aconitate hydratase, mitochondrial-like [KO:K01681] [EC:4.2.1.3]
121373086  cytoplasmic aconitate hydratase-like [KO:K01681] [EC:4.2.1.3]
121376923  isocitrate dehydrogenase [NADP], mitochondrial-like [KO:K00031] [EC:1.1.1.42]
121380705  isocitrate dehydrogenase [NADP] cytoplasmic-like [KO:K00031] [EC:1.1.1.42]
121367573  isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial-like isoform X1 [KO:K00030] [EC:1.1.1.41]
121383010  probable isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [KO:K00030] [EC:1.1.1.41]
121383206  isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [KO:K00030] [EC:1.1.1.41]
121378647  2-oxoglutarate dehydrogenase, mitochondrial-like isoform X1 [KO:K00164] [EC:1.2.4.2]
121371106  dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial-like [KO:K00658] [EC:2.3.1.61]
121369109  dihydrolipoyl dehydrogenase, mitochondrial-like [KO:K00382] [EC:1.8.1.4]
121382532  succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial-like isoform X1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
121369234  succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
121371600  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [KO:K01900] [EC:6.2.1.4 6.2.1.5]
121377442  succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like [KO:K00234] [EC:1.3.5.1]
121389895  succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
121392209  LOW QUALITY PROTEIN: succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial-like [KO:K00235] [EC:1.3.5.1]
121386325  succinate dehydrogenase cytochrome b560 subunit, mitochondrial-like [KO:K00236]
121383379  succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial-like [KO:K00237]
121390348  fumarate hydratase class I, aerobic-like [KO:K01676] [EC:4.2.1.2]
121371267  fumarate hydratase, mitochondrial-like [KO:K01679] [EC:4.2.1.2]
121370456  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
121370457  malate dehydrogenase, cytoplasmic-like [KO:K00025] [EC:1.1.1.37]
121367379  malate dehydrogenase, mitochondrial-like [KO:K00026] [EC:1.1.1.37]
121371539  pyruvate carboxylase, mitochondrial-like isoform X1 [KO:K01958] [EC:6.4.1.1]
121388265  phosphoenolpyruvate carboxykinase [GTP]-like [KO:K01596] [EC:4.1.1.32]
121388556  phosphoenolpyruvate carboxykinase, cytosolic [GTP]-like isoform X1 [KO:K01596] [EC:4.1.1.32]
121370833  probable pyruvate dehydrogenase E1 component subunit alpha, mitochondrial [KO:K00161] [EC:1.2.4.1]
121369049  pyruvate dehydrogenase E1 component subunit beta, mitochondrial-like [KO:K00162] [EC:1.2.4.1]
121377660  dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial-like [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gae00010  Glycolysis / Gluconeogenesis
gae00053  Ascorbate and aldarate metabolism
gae00061  Fatty acid biosynthesis
gae00062  Fatty acid elongation
gae00071  Fatty acid degradation
gae00190  Oxidative phosphorylation
gae00220  Arginine biosynthesis
gae00250  Alanine, aspartate and glutamate metabolism
gae00280  Valine, leucine and isoleucine degradation
gae00350  Tyrosine metabolism
gae00470  D-Amino acid metabolism
gae00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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