KEGG   PATHWAY: gam00630
Entry
gam00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Gordonia amarae
Class
Metabolism; Carbohydrate metabolism
Pathway map
gam00630  Glyoxylate and dicarboxylate metabolism
gam00630

Module
gam_M00621  Glycine cleavage system [PATH:gam00630]
gam_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:gam00630]
Other DBs
GO: 0046487 0043648
Organism
Gordonia amarae [GN:gam]
Gene
GII34_02120  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
GII34_02435  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
GII34_06725  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
GII34_13115  malate synthase G [KO:K01638] [EC:2.3.3.9]
GII34_05455  helix-turn-helix domain-containing protein [KO:K01647] [EC:2.3.3.1]
GII34_05460  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
GII34_05935  citrate synthase [KO:K01647] [EC:2.3.3.1]
GII34_05965  citrate synthase [KO:K01647] [EC:2.3.3.1]
GII34_08060  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
GII34_12165  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
GII34_20400  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_00680  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
GII34_01830  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_02935  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_07015  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_08760  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_18835  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
GII34_18855  steroid 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
GII34_18960  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_19890  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_19985  acetyl-CoA C-acyltransferase [KO:K00626] [EC:2.3.1.9]
GII34_08755  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
GII34_08105  biotin/lipoyl-binding protein [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
GII34_08135  methylmalonyl-CoA carboxyltransferase [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
GII34_08130  acyl-CoA carboxylase subunit epsilon [KO:K27095]
GII34_14925  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
GII34_12035  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
GII34_12040  methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
GII34_03490  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
GII34_16410  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
GII34_14805  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
GII34_01325  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GII34_06055  glutamine synthetase type III [KO:K01915] [EC:6.3.1.2]
GII34_14650  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GII34_14675  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
GII34_07170  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
GII34_13125  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
GII34_14600  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
GII34_02005  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GII34_13150  gcvH; glycine cleavage system protein GcvH [KO:K02437]
GII34_05130  NAD-binding protein [KO:K00042] [EC:1.1.1.60]
GII34_14560  glycerate kinase [KO:K00865] [EC:2.7.1.165]
GII34_08470  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
GII34_02210  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gam00010  Glycolysis / Gluconeogenesis
gam00020  Citrate cycle (TCA cycle)
gam00030  Pentose phosphate pathway
gam00053  Ascorbate and aldarate metabolism
gam00071  Fatty acid degradation
gam00230  Purine metabolism
gam00250  Alanine, aspartate and glutamate metabolism
gam00260  Glycine, serine and threonine metabolism
gam00620  Pyruvate metabolism
gam00710  Carbon fixation by Calvin cycle
gam00750  Vitamin B6 metabolism
gam00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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