KEGG   PATHWAY: gami00630
Entry
gami00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Gordonia amicalis
Class
Metabolism; Carbohydrate metabolism
Pathway map
gami00630  Glyoxylate and dicarboxylate metabolism
gami00630

Module
gami_M00012  Glyoxylate cycle [PATH:gami00630]
gami_M00621  Glycine cleavage system [PATH:gami00630]
gami_M00741  Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH:gami00630]
Other DBs
GO: 0046487 0043648
Organism
Gordonia amicalis [GN:gami]
Gene
IHQ52_06155  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
IHQ52_02195  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
IHQ52_03810  AMP-binding protein [KO:K01895] [EC:6.2.1.1]
IHQ52_14410  acsA; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
IHQ52_13665  malate synthase G [KO:K01638] [EC:2.3.3.9]
IHQ52_13600  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
IHQ52_09195  citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
IHQ52_09260  citrate synthase [KO:K01647] [EC:2.3.3.1]
IHQ52_04720  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IHQ52_15810  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
IHQ52_00470  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_00670  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_01555  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_01825  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_10330  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_10845  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_12405  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_20190  enoyl-CoA hydratase-related protein [KO:K00626] [EC:2.3.1.9]
IHQ52_22860  thiolase domain-containing protein [KO:K00626] [EC:2.3.1.9]
IHQ52_22890  steroid 3-ketoacyl-CoA thiolase [KO:K00626] [EC:2.3.1.9]
IHQ52_23025  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
IHQ52_12400  mce; methylmalonyl-CoA epimerase [KO:K05606] [EC:5.1.99.1]
IHQ52_11880  acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha [KO:K11263] [EC:6.4.1.2 6.4.1.3 6.3.4.14]
IHQ52_11920  acyl-CoA carboxylase subunit beta [KO:K27094] [EC:6.4.1.3 6.4.1.- 2.1.3.15]
IHQ52_11915  acyl-CoA carboxylase subunit epsilon [KO:K27095]
IHQ52_18860  acyl-CoA carboxylase subunit beta [KO:K18472] [EC:6.4.1.2 6.4.1.3 2.1.3.15]
IHQ52_15715  scpA; methylmalonyl-CoA mutase [KO:K01847] [EC:5.4.99.2]
IHQ52_15720  methylmalonyl-CoA mutase family protein [KO:K01847] [EC:5.4.99.2]
IHQ52_00795  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
IHQ52_05030  catalase [KO:K03781] [EC:1.11.1.6]
IHQ52_18760  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
IHQ52_04495  glnT; type III glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
IHQ52_09400  glutamine synthetase III [KO:K01915] [EC:6.3.1.2]
IHQ52_18685  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
IHQ52_18710  glnA; type I glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
IHQ52_19495  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
IHQ52_11025  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
IHQ52_12260  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
IHQ52_13655  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
IHQ52_18645  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
IHQ52_06070  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
IHQ52_13630  gcvH; glycine cleavage system protein GcvH [KO:K02437]
IHQ52_18620  glycerate kinase [KO:K00865] [EC:2.7.1.165]
IHQ52_12140  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
IHQ52_23515  molybdopterin-dependent oxidoreductase [KO:K00123] [EC:1.17.1.9]
IHQ52_23520  4Fe-4S dicluster domain-containing protein [KO:K00124]
IHQ52_06270  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gami00010  Glycolysis / Gluconeogenesis
gami00020  Citrate cycle (TCA cycle)
gami00030  Pentose phosphate pathway
gami00053  Ascorbate and aldarate metabolism
gami00071  Fatty acid degradation
gami00230  Purine metabolism
gami00250  Alanine, aspartate and glutamate metabolism
gami00260  Glycine, serine and threonine metabolism
gami00620  Pyruvate metabolism
gami00710  Carbon fixation by Calvin cycle
gami00750  Vitamin B6 metabolism
gami00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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