KEGG   PATHWAY: gea00020
Entry
gea00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacillus sp. 12AMOR1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gea00020  Citrate cycle (TCA cycle)
gea00020

Module
gea_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gea00020]
gea_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gea00020]
gea_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gea00020]
gea_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gea00020]
gea_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gea00020]
Other DBs
GO: 0006099
Organism
Geobacillus sp. 12AMOR1 [GN:gea]
Gene
GARCT_02791  citZ; Citrate synthase 2 [KO:K01647] [EC:2.3.3.1]
GARCT_01355  citB; Aconitate hydratase [KO:K01681] [EC:4.2.1.3]
GARCT_02790  icd; Isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
GARCT_01044  odhA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GARCT_01045  odhB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
GARCT_01080  pdhD; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GARCT_02358  lpd; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GARCT_01309  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GARCT_01310  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GARCT_01217  sucD; Succinyl-CoA ligase (ADP-forming) subunit alpha [KO:K01902] [EC:6.2.1.5]
GARCT_01216  sucC; Succinyl-CoA ligase (ADP-forming) subunit beta [KO:K01903] [EC:6.2.1.5]
GARCT_02714  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GARCT_02713  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GARCT_02715  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
GARCT_00465  ttdB; L(+)-tartrate dehydratase subunit beta [KO:K01676] [EC:4.2.1.2]
GARCT_00305  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
GARCT_02789  mdh; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GARCT_01400  mqo1; putative malate:quinone oxidoreductase 1 [KO:K00116] [EC:1.1.5.4]
GARCT_01099  cfiB_1; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
GARCT_02878  pckA; Phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GARCT_01077  pdhA_1; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GARCT_03253  pdhA_2; Pyruvate dehydrogenase E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GARCT_01078  pdhB_1; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GARCT_03252  pdhB_2; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
GARCT_03254  pdhC_3; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
GARCT_01079  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gea00010  Glycolysis / Gluconeogenesis
gea00053  Ascorbate and aldarate metabolism
gea00061  Fatty acid biosynthesis
gea00071  Fatty acid degradation
gea00190  Oxidative phosphorylation
gea00220  Arginine biosynthesis
gea00250  Alanine, aspartate and glutamate metabolism
gea00280  Valine, leucine and isoleucine degradation
gea00350  Tyrosine metabolism
gea00470  D-Amino acid metabolism
gea00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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