KEGG   PATHWAY: gej00020
Entry
gej00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacillus sp. JS12
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gej00020  Citrate cycle (TCA cycle)
gej00020

Module
gej_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gej00020]
gej_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gej00020]
gej_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gej00020]
Other DBs
GO: 0006099
Organism
Geobacillus sp. JS12 [GN:gej]
Gene
A0V43_11615  citrate synthase [KO:K01647] [EC:2.3.3.1]
A0V43_11610  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A0V43_02290  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
A0V43_02295  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A0V43_09775  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0V43_02480  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A0V43_03655  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
A0V43_03185  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A0V43_03180  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A0V43_11230  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
A0V43_11225  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
A0V43_11235  succinate dehydrogenase [KO:K00241]
A0V43_17910  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A0V43_17040  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
A0V43_11605  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A0V43_04165  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
A0V43_12150  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A0V43_02465  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A0V43_13910  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
A0V43_02470  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
A0V43_13905  2-oxoisovalerate dehydrogenase [KO:K00162] [EC:1.2.4.1]
A0V43_13915  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
A0V43_04115  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
A0V43_02475  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gej00010  Glycolysis / Gluconeogenesis
gej00053  Ascorbate and aldarate metabolism
gej00061  Fatty acid biosynthesis
gej00071  Fatty acid degradation
gej00190  Oxidative phosphorylation
gej00220  Arginine biosynthesis
gej00250  Alanine, aspartate and glutamate metabolism
gej00280  Valine, leucine and isoleucine degradation
gej00350  Tyrosine metabolism
gej00470  D-Amino acid metabolism
gej00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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