KEGG   PATHWAY: gez00020
Entry
gez00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Georgenia wutianyii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gez00020  Citrate cycle (TCA cycle)
gez00020

Module
gez_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gez00020]
gez_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gez00020]
gez_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gez00020]
gez_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gez00020]
Other DBs
GO: 0006099
Organism
Georgenia wutianyii [GN:gez]
Gene
FE251_02715  citrate synthase [KO:K01647] [EC:2.3.3.1]
FE251_01760  citrate synthase [KO:K01647] [EC:2.3.3.1]
FE251_08630  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
FE251_12655  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FE251_12330  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
FE251_08985  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FE251_12700  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FE251_12705  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FE251_00440  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
FE251_12575  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FE251_12580  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FE251_12570  succinate dehydrogenase cytochrome b subunit [KO:K00241]
FE251_12890  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FE251_12650  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FE251_05945  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FE251_08990  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gez00010  Glycolysis / Gluconeogenesis
gez00053  Ascorbate and aldarate metabolism
gez00061  Fatty acid biosynthesis
gez00071  Fatty acid degradation
gez00190  Oxidative phosphorylation
gez00220  Arginine biosynthesis
gez00250  Alanine, aspartate and glutamate metabolism
gez00280  Valine, leucine and isoleucine degradation
gez00350  Tyrosine metabolism
gez00470  D-Amino acid metabolism
gez00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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