KEGG   PATHWAY: ggr03430
Entry
ggr03430                    Pathway                                
Name
Mismatch repair - Gemmatimonas groenlandica
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
ggr03430  Mismatch repair
ggr03430

Other DBs
GO: 0006298
Organism
Gemmatimonas groenlandica [GN:ggr]
Gene
HKW67_15870  mutS; DNA mismatch repair protein MutS [KO:K03555]
HKW67_04890  hypothetical protein [KO:K07456]
HKW67_06440  mutL; DNA mismatch repair endonuclease MutL [KO:K03572]
HKW67_06360  UvrD-helicase domain-containing protein [KO:K03657] [EC:5.6.2.4]
HKW67_11230  ATP-dependent helicase [KO:K03657] [EC:5.6.2.4]
HKW67_05005  xseA; exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
HKW67_05010  xseB; exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
HKW67_04905  recJ; single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
HKW67_04595  single-stranded DNA-binding protein [KO:K03111]
HKW67_11245  dnaE; DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
HKW67_15730  dnaN; DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
HKW67_09045  dnaX; DNA polymerase III subunit gamma/tau [KO:K02343] [EC:2.7.7.7]
HKW67_15860  holA; DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
HKW67_03090  DNA polymerase III subunit [KO:K02341] [EC:2.7.7.7]
HKW67_10990  ligA; NAD-dependent DNA ligase LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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