KEGG   PATHWAY: gkd00630
Entry
gkd00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Grimontia kaedaensis
Class
Metabolism; Carbohydrate metabolism
Pathway map
gkd00630  Glyoxylate and dicarboxylate metabolism
gkd00630

Module
gkd_M00012  Glyoxylate cycle [PATH:gkd00630]
gkd_M00621  Glycine cleavage system [PATH:gkd00630]
Other DBs
GO: 0046487 0043648
Organism
Grimontia kaedaensis [GN:gkd]
Gene
K6Q96_13615  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
K6Q96_15795  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
K6Q96_20095  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
K6Q96_13620  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
K6Q96_15095  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
K6Q96_04940  citrate synthase [KO:K01647] [EC:2.3.3.1]
K6Q96_05755  citryl-CoA lyase [KO:K01647] [EC:2.3.3.1]
K6Q96_07440  prpC; 2-methylcitrate synthase [KO:K01659] [EC:2.3.3.5]
K6Q96_02060  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
K6Q96_17350  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K6Q96_03225  acetyl-CoA C-acetyltransferase [KO:K00626] [EC:2.3.1.9]
K6Q96_03230  SDR family oxidoreductase [KO:K00023] [EC:1.1.1.36]
K6Q96_21560  FAD-binding protein [KO:K00104] [EC:1.1.99.14]
K6Q96_21565  glcE; glycolate oxidase subunit GlcE [KO:K11472] [EC:1.1.99.14]
K6Q96_21570  glcF; glycolate oxidase subunit GlcF [KO:K11473] [EC:1.1.99.14]
K6Q96_18685  catalase [KO:K03781] [EC:1.11.1.6]
K6Q96_15030  D-2-hydroxyacid dehydrogenase [KO:K00018] [EC:1.1.1.29]
K6Q96_23885  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
K6Q96_01035  phosphoglycolate phosphatase [KO:K01091] [EC:3.1.3.18]
K6Q96_06260  HAD-IA family hydrolase [KO:K01091] [EC:3.1.3.18]
K6Q96_08555  form I ribulose bisphosphate carboxylase large subunit [KO:K01601] [EC:4.1.1.39]
K6Q96_08550  ribulose bisphosphate carboxylase small subunit [KO:K01602] [EC:4.1.1.39]
K6Q96_01450  alanine--glyoxylate aminotransferase family protein [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
K6Q96_16255  glnA; glutamate--ammonia ligase [KO:K01915] [EC:6.3.1.2]
K6Q96_05230  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K6Q96_05240  glutamine synthetase family protein [KO:K01915] [EC:6.3.1.2]
K6Q96_07730  glutamine synthetase [KO:K01915] [EC:6.3.1.2]
K6Q96_07365  aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme [KO:K00600] [EC:2.1.2.1]
K6Q96_13380  serine hydroxymethyltransferase [KO:K00600] [EC:2.1.2.1]
K6Q96_18965  gcvP; aminomethyl-transferring glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
K6Q96_18985  gcvT; glycine cleavage system aminomethyltransferase GcvT [KO:K00605] [EC:2.1.2.10]
K6Q96_00960  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6Q96_02035  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
K6Q96_18970  gcvH; glycine cleavage system protein GcvH [KO:K02437]
K6Q96_02425  gcvH; glycine cleavage system protein GcvH [KO:K02437]
K6Q96_20100  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
K6Q96_20105  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
K6Q96_20110  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
K6Q96_06115  NAD(P)-dependent oxidoreductase [KO:K00042] [EC:1.1.1.60]
K6Q96_02065  glycerate kinase [KO:K00865] [EC:2.7.1.165]
K6Q96_20115  glycerate kinase [KO:K11529] [EC:2.7.1.165]
K6Q96_21600  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K6Q96_05500  bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase [KO:K01625] [EC:4.1.2.14 4.1.3.42]
K6Q96_18365  formate dehydrogenase subunit delta [KO:K00126] [EC:1.17.1.9]
K6Q96_18360  fdhF; formate dehydrogenase subunit alpha [KO:K00123] [EC:1.17.1.9]
K6Q96_18355  NADH-quinone oxidoreductase subunit NuoF [KO:K00124]
K6Q96_18350  formate dehydrogenase subunit gamma [KO:K00127]
K6Q96_17370  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
K6Q96_05045  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
gkd00010  Glycolysis / Gluconeogenesis
gkd00020  Citrate cycle (TCA cycle)
gkd00030  Pentose phosphate pathway
gkd00053  Ascorbate and aldarate metabolism
gkd00071  Fatty acid degradation
gkd00230  Purine metabolism
gkd00250  Alanine, aspartate and glutamate metabolism
gkd00260  Glycine, serine and threonine metabolism
gkd00620  Pyruvate metabolism
gkd00710  Carbon fixation by Calvin cycle
gkd00750  Vitamin B6 metabolism
gkd00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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