KEGG   PATHWAY: gli00020
Entry
gli00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Geobacillus lituanicus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gli00020  Citrate cycle (TCA cycle)
gli00020

Module
gli_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gli00020]
gli_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gli00020]
gli_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gli00020]
gli_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gli00020]
gli_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gli00020]
Other DBs
GO: 0006099
Organism
Geobacillus lituanicus [GN:gli]
Gene
GLN3_06510  citrate synthase [KO:K01647] [EC:2.3.3.1]
GLN3_17015  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
GLN3_06505  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
GLN3_15455  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
GLN3_15460  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
GLN3_04805  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GLN3_15650  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
GLN3_16785  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
GLN3_16790  2-oxoacid ferredoxin oxidoreductase [KO:K00175] [EC:1.2.7.3 1.2.7.11]
GLN3_16320  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
GLN3_16315  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
GLN3_06210  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
GLN3_06205  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
GLN3_06215  succinate dehydrogenase [KO:K00241]
GLN3_12585  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
GLN3_11700  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
GLN3_06500  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
GLN3_00415  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
GLN3_15740  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
GLN3_06955  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
GLN3_15635  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GLN3_08775  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
GLN3_15640  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GLN3_08770  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
GLN3_08780  dienelactone hydrolase [KO:K00627] [EC:2.3.1.12]
GLN3_15645  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gli00010  Glycolysis / Gluconeogenesis
gli00053  Ascorbate and aldarate metabolism
gli00061  Fatty acid biosynthesis
gli00071  Fatty acid degradation
gli00190  Oxidative phosphorylation
gli00220  Arginine biosynthesis
gli00250  Alanine, aspartate and glutamate metabolism
gli00280  Valine, leucine and isoleucine degradation
gli00350  Tyrosine metabolism
gli00470  D-Amino acid metabolism
gli00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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