KEGG   PATHWAY: gln00020
Entry
gln00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Glaciihabitans sp. INWT7
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gln00020  Citrate cycle (TCA cycle)
gln00020

Module
gln_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gln00020]
gln_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:gln00020]
gln_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gln00020]
gln_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:gln00020]
gln_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gln00020]
Other DBs
GO: 0006099
Organism
Glaciihabitans sp. INWT7 [GN:gln]
Gene
F1C58_11925  citrate synthase [KO:K01647] [EC:2.3.3.1]
F1C58_08510  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
F1C58_13815  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F1C58_05040  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
F1C58_08605  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F1C58_13875  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
F1C58_13880  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
F1C58_02770  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
F1C58_02765  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
F1C58_02780  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
F1C58_02775  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
F1C58_12195  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F1C58_07155  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F1C58_02190  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
F1C58_06605  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
F1C58_05265  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
F1C58_08795  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
F1C58_08610  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
F1C58_02135  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gln00010  Glycolysis / Gluconeogenesis
gln00053  Ascorbate and aldarate metabolism
gln00061  Fatty acid biosynthesis
gln00071  Fatty acid degradation
gln00190  Oxidative phosphorylation
gln00220  Arginine biosynthesis
gln00250  Alanine, aspartate and glutamate metabolism
gln00280  Valine, leucine and isoleucine degradation
gln00350  Tyrosine metabolism
gln00470  D-Amino acid metabolism
gln00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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