KEGG   PATHWAY: glo00020
Entry
glo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Trichlorobacter lovleyi
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
glo00020  Citrate cycle (TCA cycle)
glo00020

Module
glo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:glo00020]
glo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:glo00020]
glo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:glo00020]
glo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:glo00020]
glo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:glo00020]
Other DBs
GO: 0006099
Organism
Trichlorobacter lovleyi [GN:glo]
Gene
Glov_1379  Citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
Glov_1113  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
Glov_1612  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
Glov_1887  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Glov_1624  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Glov_1635  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Glov_1610  catalytic domain of components of various dehydrogenase complexes [KO:K00658] [EC:2.3.1.61]
Glov_1611  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Glov_3720  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Glov_1076  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Glov_1627  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Glov_2309  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Glov_3719  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Glov_1075  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Glov_1628  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Glov_2308  thiamine pyrophosphate protein domain protein TPP-binding [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Glov_1629  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
Glov_2307  pyruvate ferredoxin/flavodoxin oxidoreductase [KO:K00177] [EC:1.2.7.3]
Glov_1626  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Glov_2310  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00176] [EC:1.2.7.3]
Glov_2718  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Glov_2717  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Glov_2213  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Glov_2212  4Fe-4S ferredoxin iron-sulfur binding domain protein [KO:K00240] [EC:1.3.5.1]
Glov_2214  succinate dehydrogenase (or fumarate reductase) cytochrome b subunit, b558 family [KO:K00241]
Glov_3541  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
Glov_3625  flavocytochrome c [KO:K26318] [EC:1.3.2.4]
Glov_2615  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit [KO:K01676] [EC:4.2.1.2]
Glov_1071  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Glov_1625  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
Glov_2549  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
Glov_3462  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Glov_0368  pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
glo00010  Glycolysis / Gluconeogenesis
glo00053  Ascorbate and aldarate metabolism
glo00061  Fatty acid biosynthesis
glo00071  Fatty acid degradation
glo00190  Oxidative phosphorylation
glo00220  Arginine biosynthesis
glo00250  Alanine, aspartate and glutamate metabolism
glo00280  Valine, leucine and isoleucine degradation
glo00350  Tyrosine metabolism
glo00470  D-Amino acid metabolism
glo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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