KEGG   PATHWAY: gma00020
Entry
gma00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Granulicella mallensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
gma00020  Citrate cycle (TCA cycle)
gma00020

Module
gma_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:gma00020]
gma_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:gma00020]
gma_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:gma00020]
Other DBs
GO: 0006099
Organism
Granulicella mallensis [GN:gma]
Gene
AciX8_2753  2-methylcitrate synthase/citrate synthase II [KO:K01647] [EC:2.3.3.1]
AciX8_4469  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AciX8_1286  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AciX8_3687  Isocitrate dehydrogenase (NAD(+)) [KO:K00030] [EC:1.1.1.41]
AciX8_1054  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
AciX8_4851  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AciX8_0622  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AciX8_0621  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
AciX8_1302  succinate dehydrogenase or fumarate reductase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AciX8_1299  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
AciX8_1303  succinate dehydrogenase cytochrome b subunit [KO:K00241]
AciX8_0827  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
AciX8_1289  malate dehydrogenase, NAD-dependent [KO:K00024] [EC:1.1.1.37]
AciX8_0596  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
AciX8_1886  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
AciX8_4853  2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
gma00010  Glycolysis / Gluconeogenesis
gma00053  Ascorbate and aldarate metabolism
gma00061  Fatty acid biosynthesis
gma00071  Fatty acid degradation
gma00190  Oxidative phosphorylation
gma00220  Arginine biosynthesis
gma00250  Alanine, aspartate and glutamate metabolism
gma00280  Valine, leucine and isoleucine degradation
gma00350  Tyrosine metabolism
gma00470  D-Amino acid metabolism
gma00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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